Registry Chan Zuckerberg CELLxGENE Collection

Assigns identifiers to collections of datasets indexed by CELLxGENE.

CELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types.

Prefix: cellxgene.collection
License: CC-BY-4.0
Links: Homepage Request Discussion
Publications: 2024 CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Chan Zuckerberg CELLxGENE Collection should match this regular expression:
^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$
Example Local Unique Identifier: 436154da-bcf1-4130-9c8b-120ff9a888f2 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Chan Zuckerberg CELLxGENE Collection should match this regular expression:
^cellxgene\.collection:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$
Example CURIE: cellxgene.collection:436154da-bcf1-4130-9c8b-120ff9a888f2

Contacts

Contact: Ambrose Carr 0000-0002-8457-2836 ambrosejcarr
Contributors: submitter Robert Allaway 0000-0003-3573-3565 allaway
Reviewer: Benjamin M. Gyori 0000-0001-9439-5346 bgyori; Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection: Synapse.org external links

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 436154da-bcf1-4130-9c8b-120ff9a888f2 is used to demonstrate the providers available for Chan Zuckerberg CELLxGENE Collection. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Chan Zuckerberg CELLxGENE Collection	`cellxgene.collection`	https://cellxgene.cziscience.com/collections/436154da-bcf1-4130-9c8b-120ff9a888f2
Bioregistry	`bioregistry`	https://bioregistry.io/cellxgene.collection:436154da-bcf1-4130-9c8b-120ff9a888f2

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("cellxgene.collection")
'Chan Zuckerberg CELLxGENE Collection'

Get the license:

>>> import bioregistry as br
>>> br.get_license("cellxgene.collection")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("cellxgene.collection")
'https://cellxgene.cziscience.com/collections'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("cellxgene.collection")
'Ambrose Carr'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("cellxgene.collection")
'acarr@chanzuckerberg.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("cellxgene.collection")
'ambrosejcarr'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("cellxgene.collection")
'0000-0002-8457-2836'