Registry Cancer Cell Line Encyclopedia Cells

Suggest

Datasets around different cancer cell lines generated by the Broad Institute and Novartis

Prefix: ccle
Alternative Prefixes: ccle.cell
Keywords: cancer cell line cell cell line ontology
License: ODbL-1.0
Links: Homepage OBO OWL OBO JSON
Publications: 2020 Quantitative Proteomics of the Cancer Cell Line Encyclopedia; 2019 Next-generation characterization of the Cancer Cell Line Encyclopedia

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: BT20_BREAST Resolve
Example CURIE: ccle:BT20_BREAST

Contacts

Contact: William R. Sellers 0000-0002-3539-9803
Contributors: submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier BT20_BREAST is used to demonstrate the providers available for Cancer Cell Line Encyclopedia Cells. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Cancer Cell Line Encyclopedia Cells	`ccle`	https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=BT20_BREAST
Bioregistry	`bioregistry`	https://bioregistry.io/ccle:BT20_BREAST

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("ccle.cell")
'ccle'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("ccle")
{'ccle.cell'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("ccle")
'Cancer Cell Line Encyclopedia Cells'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ccle")
'ODbL-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ccle")
'https://www.cbioportal.org/study/summary?id=ccle_broad_2019'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ccle")
'https://w3id.org/biopragmatics/resources/ccle/ccle.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ccle")
'https://w3id.org/biopragmatics/resources/ccle/ccle.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("ccle")
'https://w3id.org/biopragmatics/resources/ccle/ccle.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ccle")
'William R. Sellers'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ccle")
'wsellers@broadinstitute.org'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ccle")
'0000-0002-3539-9803'