The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in The cBioPortal for Cancer Genomics should match this regular expression:
^[a-z0-9\_]+$ - Example Local Unique Identifier
- laml_tcga_pub Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from The cBioPortal for Cancer Genomics should match this regular expression:
^cbioportal:[a-z0-9\_]+$ - Example CURIE
- cbioportal:laml_tcga_pub
Contacts
- Contact
-
Jianjiong Gao
0000-0002-5739-1781
jjgao
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Identifiers.org
|
miriam |
cbioportal
|
|
N2T
|
n2t |
cbioportal
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier laml_tcga_pub is used to demonstrate the providers
available for The cBioPortal for Cancer Genomics. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| The cBioPortal for Cancer Genomics | cbioportal |
https://www.cbioportal.org/study/summary?id=laml_tcga_pub |
| Bioregistry | bioregistry |
https://bioregistry.io/cbioportal:laml_tcga_pub |
| Identifiers.org | miriam |
https://identifiers.org/cbioportal:laml_tcga_pub |
| Name-to-Thing | n2t |
https://n2t.net/cbioportal:laml_tcga_pub |