The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.
biosystems
Local identifiers in BioSystems should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from BioSystems should match
this regular expression:
^biosystems:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIOSYSTEMS
|
|
FAIRSharing | fairsharing |
FAIRsharing.w2eeqr
|
|
Integbio | integbio |
nbdc00379
|
|
Identifiers.org | miriam |
biosystems
|
|
N2T | n2t |
biosystems
|
|
Prefix Commons | prefixcommons |
biosystems
|
|
re3data | re3data |
r3d100011033
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 001
is used to demonstrate the providers
available for BioSystems. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
BioSystems | biosystems |
https://www.ncbi.nlm.nih.gov/biosystems/001 |
Bioregistry | bioregistry |
https://bioregistry.io/biosystems:001 |
Identifiers.org | miriam |
https://identifiers.org/biosystems:001 |
Name-to-Thing | n2t |
https://n2t.net/biosystems:001 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/biosystems:001 |