Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in BioLink Model should match this regular expression:
^\S+$ - Example Local Unique Identifier
- Gene Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BioLink Model should match this regular expression:
^biolink:\S+$ - Example CURIE
- biolink:Gene
Contacts
- Contact
-
Chris Mungall
0000-0002-6601-2165
cmungall
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- GHGA Collection
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
BIOLINK
|
|
Biolink
|
biolink |
biolink
|
|
BioPortal
|
bioportal |
BIOLINK
|
|
Identifiers.org
|
miriam |
biolink
|
|
OLS
|
ols |
biolink
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier Gene is used to demonstrate the providers
available for BioLink Model. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| BioLink Model | biolink |
https://biolink.github.io/biolink-model/Gene |
| Bioregistry | bioregistry |
https://bioregistry.io/biolink:Gene |
| Identifiers.org | miriam |
https://identifiers.org/biolink:Gene |