The BioDeep database is a comprehensive database of metabolite information in living organisms: by aggregating metabolite information from multiple public databases and large-scale natural language text mining work, we have built a large scale knowledge network for biological knowledge interpretation. By using the BioDeep database, it is possible to query such large scale metabolic knowledge network.

Prefix

biodeep

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in BioDeep Database should match this regular expression:
^\d{11}$

Example Local Unique Identifier

00000000001   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BioDeep Database should match this regular expression:
^biodeep:\d{11}$

Example CURIE

biodeep:00000000001

Namespace Embedded in LUI

This resource has been annotated by the Bioregistry as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For BioDeep Database, the banana looks like BioDeep_. Therefore, you may see local unique identifiers for this resource that look like BioDeep_00000000001 (instead of the canonical form 00000000001) and CURIEs for this resource that look like biodeep:BioDeep_00000000001 (instead of the canonical form biodeep:00000000001). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 00000000001 is used to demonstrate the providers available for BioDeep Database. A guide for curating additional providers can be found here.