AntiFam is a database of spurious protein families that have been removed from Pfam due to incorrect hidden Markov model prediction.
- Prefix
antifam- Links
- Homepage Request Discussion
- Contact
- Alex Bateman 0000-0002-6982-4660
- Pattern for Local Unique Identifiers
-
Local identifiers in AntiFam should match this regular expression:
^ANF\d{5}$ - Example Local Unique Identifier
- ANF00001 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from AntiFam should match this regular expression:
^antifam:ANF\d{5}$ - Example CURIE
- antifam:ANF00001
- Publications
- 2012 AntiFam: a tool to help identify spurious ORFs in protein annotation
- Contributors
-
- submitter Benjamin M. Gyori 0000-0001-9439-5346 bgyori
- Reviewer
- Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection
- Biocuration Conference 2025 Collection
Metaregistry AntiFam
The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
UniProt
|
uniprot |
DB-0275
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ANF00001 is used to demonstrate the providers
available for AntiFam. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| AntiFam | antifam |
https://www.ebi.ac.uk/interpro/entry/antifam/ANF00001 |
| Bioregistry | bioregistry |
https://bioregistry.io/antifam:ANF00001 |