SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.
spike.map
Local identifiers in SPIKE Map should match this
regular expression:
^spike\d{5}$
Compact URIs (CURIEs) constructed from SPIKE Map should match
this regular expression:
^spike\.map:spike\d{5}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
SPIKE.MAP
|
|
Identifiers.org | miriam |
spike.map
|
|
N2T | n2t |
spike.map
|
|
Prefix Commons | prefixcommons |
spike
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier spike00001
is used to demonstrate the providers
available for SPIKE Map. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
SPIKE Map | spike.map |
http://www.cs.tau.ac.il/~spike/maps/spike00001.html |
Bioregistry | bioregistry |
https://bioregistry.io/spike.map:spike00001 |
Identifiers.org | miriam |
https://identifiers.org/spike.map:spike00001 |
Name-to-Thing | n2t |
https://n2t.net/spike.map:spike00001 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/spike:spike00001 |