A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

Prefix

greengenes

Keywords

genetics life science rna

Links

Homepage

Contact

Gary L Andersen   0000-0002-1618-9827

Pattern for Local Unique Identifiers

Local identifiers in 16S rRNA gene database should match this regular expression:
^\d+$

Example Local Unique Identifier

100000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:
^greengenes:\d+$

Example CURIE

greengenes:100000

Publications

• 2006 Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
• Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 100000 is used to demonstrate the providers available for 16S rRNA gene database. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.