Registry Eukaryotic Promoter Database

The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

Prefix
epd
Links
Homepage
Contact
Missing Contact
Pattern
^[A-Z-_0-9]+$
Namespace in Pattern
False
Example Identifier
TA_H3   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for epd.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam epd
Name-to-Thing n2t epd
National Center for Biotechnology Information Registry ncbi EPD
Prefix Commons prefixcommons EPD
UniProt Cross-ref database uniprot EPD
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE epd:TA_H3 is used to demonstrate the provides available for epd. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Eukaryotic Promoter Database epd http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=TA_H3
Bioregistry bioregistry https://bioregistry.io/epd:TA_H3
Identifiers.org miriam https://identifiers.org/epd:TA_H3
Name-to-Thing n2t https://n2t.net/epd:TA_H3