{"prefix":"epd","name":"Eukaryotic Promoter Database","description":"The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.","pattern":"^[A-Z-_0-9]+$","uri_format":"https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1","providers":[],"homepage":"https://epd.expasy.org/epd/","contact":{"name":"Philipp Bucher","orcid":"0000-0002-0816-7775","email":"Philipp.Bucher@sib.swiss"},"example":"TA_H3","example_extras":[],"deprecated":false,"mappings":{"biocontext":"EPD","edam":"2386","integbio":"nbdc00438","miriam":"epd","n2t":"epd","ncbi":"EPD"},"synonyms":[],"keywords":["genome/gene","sequence"],"publications":[{"pubmed":"9847211","doi":"10.1093/nar/27.1.307","pmc":"PMC148166","title":"The Eukaryotic Promoter Database (EPD): recent developments","year":1999},{"pubmed":"9399872","doi":"10.1093/nar/26.1.353","pmc":"PMC147208","title":"The Eukaryotic Promoter Database EPD","year":1998},{"pubmed":"3808945","doi":"10.1093/nar/14.24.10009","pmc":"PMC341352","title":"Compilation and analysis of eukaryotic POL II promoter sequences","year":1986},{"pubmed":"28981707","doi":"10.1093/nar/gkx807","pmc":"PMC5753345","title":"The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics","year":2018},{"pubmed":"27899657","doi":"10.1093/nar/gkw1069","pmc":"PMC5210552","title":"The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms","year":2016},{"pubmed":"25378343","doi":"10.1093/nar/gku1111","pmc":"PMC4383928","title":"The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools","year":2014},{"pubmed":"23193273","doi":"10.1093/nar/gks1233","pmc":"PMC3531148","title":"EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era","year":2012},{"pubmed":"16381980","doi":"10.1093/nar/gkj146","pmc":"PMC1347508","title":"EPD in its twentieth year: towards complete promoter coverage of selected model organisms","year":2006},{"pubmed":"14681364","doi":"10.1093/nar/gkh122","pmc":"PMC308856","title":"The Eukaryotic Promoter Database EPD: the impact of in silico primer extension","year":2004},{"pubmed":"11752326","doi":"10.1093/nar/30.1.322","pmc":"PMC99099","title":"The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data","year":2002},{"pubmed":"10592254","doi":"10.1093/nar/28.1.302","pmc":"PMC102462","title":"The eukaryotic promoter database (EPD)","year":2000}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Sébastien Moretti","orcid":"0000-0003-3947-488X","email":"sebastien.moretti@sib.swiss","github":"smoretti"}],"preferred_prefix":"epd"}