AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.

Prefix

aphidbase.transcript

Keywords

genome

Links

Homepage

Contact

Fabrice Legeai   0000-0002-6472-4839

Pattern for Local Unique Identifiers

Local identifiers in AphidBase Transcript should match this regular expression:
^ACYPI\d{6}(-RA)?$

Example Local Unique Identifier

ACYPI000159   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from AphidBase Transcript should match this regular expression:
^aphidbase\.transcript:ACYPI\d{6}(-RA)?$

Example CURIE

aphidbase.transcript:ACYPI000159

Publications

2010 AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ACYPI000159 is used to demonstrate the providers available for AphidBase Transcript. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.