AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.

Prefix
aphidbase.transcript
Links
Homepage
Contact
Missing Contact
Pattern
^ACYPI\d{6}(-RA)?$
Namespace in Pattern
False
Example Identifier
ACYPI000159   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for aphidbase.transcript.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam aphidbase.transcript
Name-to-Thing n2t aphidbase.transcript
Prefix Commons prefixcommons APHIDBASE.TRANSCRIPT
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE aphidbase.transcript:ACYPI000159 is used to demonstrate the provides available for aphidbase.transcript. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
AphidBase Transcript aphidbase.transcript http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159
Bioregistry bioregistry https://bioregistry.io/aphidbase.transcript:ACYPI000159
Identifiers.org miriam https://identifiers.org/aphidbase.transcript:ACYPI000159
Name-to-Thing n2t https://n2t.net/aphidbase.transcript:ACYPI000159