AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

Prefix

amoebadb

Keywords

functional genomics genomics model organism

Links

Homepage

Contact

Omar S. Harb   0000-0003-4446-6200   ramobrah

Pattern for Local Unique Identifiers

Local identifiers in AmoebaDB should match this regular expression:
^EDI_\d+$

Example Local Unique Identifier

EDI_244000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from AmoebaDB should match this regular expression:
^amoebadb:EDI_\d+$

Example CURIE

amoebadb:EDI_244000

Publications

2009 EuPathDB: a portal to eukaryotic pathogen databases

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1098

Contributors

• contributor Sumir H Pandit   0000-0002-1216-4761   sumirp

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier EDI_244000 is used to demonstrate the providers available for AmoebaDB. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.