appears_in: []
contact:
  email: oharb@upenn.edu
  github: ramobrah
  name: Omar S. Harb
  orcid: 0000-0003-4446-6200
contributor_extras:
- email: sumirp77@gmail.com
  github: sumirp
  name: Sumir H Pandit
  orcid: 0000-0002-1216-4761
depends_on: []
deprecated: false
description: AmoebaDB is one of the databases that can be accessed through the EuPathDB
  (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the
  genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas
  and Trypanosoma. While each of these groups is supported by a taxon-specific database
  built upon the same infrastructure, the EuPathDB portal offers an entry point to
  all these resources, and the opportunity to leverage orthology for searches across
  genera.
example: EDI_244000
homepage: http://amoebadb.org/amoeba/
keywords:
- functional genomics
- genomics
- model organism
mappings:
  biocontext: AMOEBADB
  fairsharing: FAIRsharing.swbypy
  integbio: nbdc01207
  miriam: amoebadb
  n2t: amoebadb
  prefixcommons: amoebadb
  re3data: r3d100012457
name: AmoebaDB
namespace_in_lui: false
pattern: ^EDI_\d+$
preferred_prefix: amoebadb
prefix: amoebadb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/amoebadb:$1
publications:
- doi: 10.1093/nar/gkp941
  pmc: PMC2808945
  pubmed: '19914931'
  title: 'EuPathDB: a portal to eukaryotic pathogen databases'
  year: 2009
references:
- https://github.com/biopragmatics/bioregistry/pull/1098
synonyms: []
twitter: eupathdb
uri_format: https://amoebadb.org/amoeba/app/record/gene/$1
