3DMET is a database collecting three-dimensional structures of natural metabolites.

Comment

Website has been down since 2023/2024

Prefix

_3dmet

Alternative Prefixes

3dmet

Keywords

chemical life science metabolite metabolomics structure

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in 3D Metabolites should match this regular expression:
^B\d{5}$

Example Local Unique Identifier

B00162   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from 3D Metabolites should match this regular expression:
^_3dmet:B\d{5}$

Example CURIE

_3dmet:B00162

Publications

• 2018 Chemical curation to improve data accuracy: recent development of the 3DMET database
• 2013 Three-dimensional structure database of natural metabolites (3DMET): a novel database of curated 3D structures

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier B00162 is used to demonstrate the providers available for 3D Metabolites. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.