3DMET is a database collecting three-dimensional structures of natural metabolites.
Website has been down since 2023/2024
_3dmet
Local identifiers in 3D Metabolites should match this
regular expression:
^B\d{5}$
Compact URIs (CURIEs) constructed from 3D Metabolites should match
this regular expression:
^_3dmet:B\d{5}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
3DMET
|
|
EDAM
|
edam |
2635
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.5ab0n7
|
|
Integbio
![]() |
integbio |
nbdc00351
|
|
Identifiers.org
![]() |
miriam |
3dmet
|
|
N2T
![]() |
n2t |
3dmet
|
|
Prefix Commons
|
prefixcommons |
3dmet
|
|
Wikidata
|
wikidata |
P2796
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier B00162
is used to demonstrate the providers
available for 3D Metabolites. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
3D Metabolites | _3dmet |
http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=B00162 |
Bioregistry | bioregistry |
https://bioregistry.io/_3dmet:B00162 |
Identifiers.org | miriam |
https://identifiers.org/3dmet:B00162 |
Name-to-Thing | n2t |
https://n2t.net/3dmet:B00162 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/3dmet:B00162 |