appears_in: []
comment: Website has been down since 2023/2024
depends_on: []
deprecated: true
description: 3DMET is a database collecting three-dimensional structures of natural
  metabolites.
example: B00162
example_extras: []
homepage: http://www.3dmet.dna.affrc.go.jp/
keywords:
- 3d structure
- chemical
- chemical compound
- metabolite
- structure
mappings:
  biocontext: 3DMET
  edam: '2635'
  integbio: nbdc00351
  miriam: 3dmet
  n2t: 3dmet
  prefixcommons: 3dmet
  wikidata: P2796
name: 3D Metabolites
namespace_in_lui: false
pattern: ^B\d{5}$
preferred_prefix: _3dmet
prefix: _3dmet
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/3dmet:$1
publications:
- doi: 10.2142/biophysico.15.0_87
  pmc: PMC5992871
  pubmed: '29892514'
  title: 'Chemical curation to improve data accuracy: recent development of the 3DMET
    database'
  year: 2018
- doi: 10.1021/ci300309k
  pubmed: '23293959'
  title: 'Three-dimensional structure database of natural metabolites (3DMET): a novel
    database of curated 3D structures'
  year: 2013
synonyms:
- 3dmet
uri_format: http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1
