The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.
ydpm
Local identifiers in Yeast Deletion and the Mitochondrial Proteomics Project should match this
regular expression:
^Y[A-Z]{2}\d+[CW]$
Compact URIs (CURIEs) constructed from Yeast Deletion and the Mitochondrial Proteomics Project should match
this regular expression:
^ydpm:Y[A-Z]{2}\d+[CW]$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
YDPM
|
|
Identifiers.org | miriam |
ydpm
|
|
N2T | n2t |
ydpm
|
|
Prefix Commons | prefixcommons |
ydpm
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier YAL001C
is used to demonstrate the providers
available for Yeast Deletion and the Mitochondrial Proteomics Project. A guide for curating additional providers can be found
here.
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/ydpm:YAL001C |