Registry C. elegans Gross Anatomy Ontology

Ontology about the gross anatomy of the C. elegans

Prefix: wbbt
Preferred Prefix: WBbt
Alternative Prefixes: WBbt
Keywords: anatomy cell life science obo ontology worm
Version: 2024-01-04
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Raymond Lee 0000-0002-8151-7479 raymond91125
Pattern for Local Unique Identifiers: Local identifiers in C. elegans Gross Anatomy Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0001290 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from C. elegans Gross Anatomy Ontology should match this regular expression:
^WBbt:\d{7}$
Example CURIE: WBbt:0001290
Publications: 2003 Building a cell and anatomy ontology of Caenorhabditis elegans

Metaregistry C. elegans Gross Anatomy Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`WBBT`
BioContext	`biocontext`	`WBbt`
Biolink	`biolink`	`WBbt`
BioPortal	`bioportal`	`WB-BT`
FAIRSharing	`fairsharing`	`FAIRsharing.phk7dd`
GO	`go`	`WBbt`
OBO Foundry	`obofoundry`	`wbbt`
OLS	`ols`	`wbbt`
OntoBee	`ontobee`	`WBbt`
Prefix Commons	`prefixcommons`	`wbbt`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/WBbt_$1

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE WBbt:0001290 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
C. elegans Gross Anatomy Ontology	`wbbt`	http://purl.obolibrary.org/obo/WBbt_0001290
C. elegans Gross Anatomy Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/WBbt_0001290
Bioregistry	`bioregistry`	https://bioregistry.io/wbbt:0001290
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/WBbt_0001290
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBbt_0001290
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/WB-BT/?p=classes&conceptid=http://purl.obolibrary.org/obo/WBbt_0001290

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/wbbt:0001290

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("WBbt")
'wbbt'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("wbbt")
{'WBbt'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("wbbt")
'2024-01-04'

Get the license:

>>> import bioregistry as br
>>> br.get_license("wbbt")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("wbbt")
'https://github.com/obophenotype/c-elegans-gross-anatomy-ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("wbbt")
'https://github.com/obophenotype/c-elegans-gross-anatomy-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("wbbt")
'http://purl.obolibrary.org/obo/wbbt.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("wbbt")
'http://purl.obolibrary.org/obo/wbbt.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("wbbt")
'Raymond Lee'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("wbbt")
'raymond@caltech.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("wbbt")
'raymond91125'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("wbbt")
'0000-0002-8151-7479'