Registry Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens

VectorBase is part of the VEuPathDB, a NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens and related species of interest. Currently, VectorBase contains genome information for approximately 80 organisms: mosquitoes, bed bugs, biting midges, ticks, tsetse flies, mites, sand flies, house flies, body lice, stable flies, kissing bugs, and a snail which is an intermediate host.

Prefix
vectorbase
Keywords
comparative genomics functional genomics gene genome genomics population dynamics population genetics protein
Links
Homepage
Contact
David Starns   0000-0001-6583-9067   obsidian83
Pattern for Local Unique Identifiers

Local identifiers in Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens should match this regular expression:
^\D{4}\d{6}(\-\D{2})?$

Example Local Unique Identifier
ISCW007415   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens should match this regular expression:
^vectorbase:\D{4}\d{6}(\-\D{2})?$

Example CURIE
vectorbase:ISCW007415
Publications
Metaregistry Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext VECTORBASE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3etvdn
Integbio Integbio logo integbio nbdc01909
Identifiers.org Identifiers.org logo miriam vectorbase
N2T Name-to-Thing logo n2t vectorbase
NCBI National Center for Biotechnology Information Registry logo ncbi VectorBase
Prefix Commons Prefix Commons logo prefixcommons vectorbase
re3data Registry of Research Data Repositories logo re3data r3d100010880
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ISCW007415 is used to demonstrate the providers available for Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens. A guide for curating additional providers can be found here.

Name Metaprefix URI
Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens vectorbase https://vectorbase.org/gene/ISCW007415
Bioregistry bioregistry https://bioregistry.io/vectorbase:ISCW007415
Identifiers.org miriam https://identifiers.org/vectorbase:ISCW007415
Name-to-Thing n2t https://n2t.net/vectorbase:ISCW007415
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/vectorbase:ISCW007415
vectorbase.alt1 Vectorbase Alt. 1 https://www.vectorbase.org/search/site/ISCW007415?&site="Genome"
vectorbase.alt2 Vectorbase Alt. 2 https://vectorbase.org/vectorbase/app/record/gene/ISCW007415