TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.

Prefix

tigrfam

Keywords

protein

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in TIGR protein families should match this regular expression:
^TIGR\d+$

Example Local Unique Identifier

TIGR00010   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TIGR protein families should match this regular expression:
^tigrfam:TIGR\d+$

Example CURIE

tigrfam:TIGR00010

References

• Other https://ftp.ncbi.nlm.nih.gov/hmm/TIGRFAMs/license_and_availability.txt
• GitHub Issue https://github.com/biopragmatics/bioregistry/issues/366

Contributors

• contributor Chris Mungall   0000-0002-6601-2165   cmungall

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier TIGR00010 is used to demonstrate the providers available for TIGR protein families. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.