SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.

Comment

This resource doesn't exist on the web anymore

Prefix
spbase
Keywords
dna genome rna
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
SPU_000001   Resolve
Example CURIE
spbase:SPU_000001
Reviewer
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry SpBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Integbio Integbio logo integbio nbdc00686
Prefix Commons Prefix Commons logo prefixcommons spbase
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SPU_000001 is used to demonstrate the providers available for SpBase. A guide for curating additional providers can be found here.

Name Metaprefix URI
SpBase spbase http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=SPU_000001
Bioregistry bioregistry https://bioregistry.io/spbase:SPU_000001
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/spbase:SPU_000001