The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.
so
SO
Local identifiers in Sequence types and features ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Sequence types and features ontology should match
this regular expression:
^SO:\d{7}$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Sequence types and features ontology, the banana looks like
SO:
.
Therefore, you may see local unique identifiers for this resource that look like
SO:0001157
(instead of the canonical form 0001157
) and CURIEs for this resource that look like
SO:SO:0001157
(instead of the canonical form SO:0001157
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
A summary of the relations in the Bioregistry schema can be found here.
bioregistry.schema:0000018
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL | aberowl |
SO
|
|
AgroPortal | agroportal |
SO
|
|
BioContext | biocontext |
SO
|
|
BioPortal | bioportal |
SO
|
|
FAIRSharing | fairsharing |
FAIRsharing.6bc7h9
|
|
GO | go |
SO
|
|
Identifiers.org | miriam |
so
|
|
N2T | n2t |
so
|
|
OBO Foundry | obofoundry |
so
|
|
OLS | ols |
so
|
|
OntoBee | ontobee |
SO
|
|
Prefix Commons | prefixcommons |
so
|
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/SO_$1
Providers are various services that resolve CURIEs to URLs. The example CURIE
SO:0001157
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/so:0001157 |