ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.

Prefix
seed.reaction
Links
Homepage
Contact
Missing Contact
Pattern
^rxn\d+$
Namespace in Pattern
False
Example Identifier
rxn00001   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for seed.reaction.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam seed.reaction
Name-to-Thing n2t seed.reaction
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE seed.reaction:rxn00001 is used to demonstrate the provides available for seed.reaction. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
SEED Reactions seed.reaction http://modelseed.org/biochem/reactions/rxn00001
Bioregistry bioregistry https://bioregistry.io/seed.reaction:rxn00001
Identifiers.org miriam https://identifiers.org/seed.reaction:rxn00001
Name-to-Thing n2t https://n2t.net/seed.reaction:rxn00001