ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.

Prefix
seed.reaction
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in SEED Reactions should match this regular expression:
^rxn\d+$

Example Local Unique Identifier
rxn00001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from SEED Reactions should match this regular expression:
^seed\.reaction:rxn\d+$

Example CURIE
seed.reaction:rxn00001
Metaregistry SEED Reactions

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Biolink Biolink Model Registry logo biolink SEED.REACTION
Identifiers.org Identifiers.org logo miriam seed.reaction
N2T Name-to-Thing logo n2t seed.reaction
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE seed.reaction:rxn00001 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
SEED Reactions seed.reaction http://modelseed.org/biochem/reactions/rxn00001
Bioregistry bioregistry https://bioregistry.io/seed.reaction:rxn00001
Identifiers.org miriam https://identifiers.org/seed.reaction:rxn00001
Name-to-Thing n2t https://n2t.net/seed.reaction:rxn00001