This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.

Prefix
seed
Links
Homepage
Contact
Missing Contact
Pattern
^\w+$
Namespace in Pattern
False
Example Identifier
Biotin_biosynthesis   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for seed.

Registry Name Metaprefix Metaidentifier
Gene Ontology Registry go SEED
Identifiers.org miriam seed
Name-to-Thing n2t seed
National Center for Biotechnology Information Registry ncbi SEED
Prefix Commons prefixcommons SEED
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE seed:Biotin_biosynthesis is used to demonstrate the provides available for seed. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
The SEED; seed http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=Biotin_biosynthesis
Bioregistry bioregistry https://bioregistry.io/seed:Biotin_biosynthesis
Identifiers.org miriam https://identifiers.org/seed:Biotin_biosynthesis
Name-to-Thing n2t https://n2t.net/seed:Biotin_biosynthesis