ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.

Prefix
scretf
Links
Homepage
Contact
Missing Contact
Pattern
^\w+$
Namespace in Pattern
False
Example Identifier
RSC3   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for scretf.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam scretf
Name-to-Thing n2t scretf
Prefix Commons prefixcommons SCRETF
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE scretf:RSC3 is used to demonstrate the provides available for scretf. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
ScerTF scretf http://stormo.wustl.edu/ScerTF/details/RSC3
Bioregistry bioregistry https://bioregistry.io/scretf:RSC3
Identifiers.org miriam https://identifiers.org/scretf:RSC3
Name-to-Thing n2t https://n2t.net/scretf:RSC3