Registry Rice Genome Annotation Project

The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.

Prefix
ricegap
Links
Homepage
Contact
Missing Contact
Pattern
^LOC\_Os\d{1,2}g\d{5}$
Namespace in Pattern
False
Example Identifier
LOC_Os02g13300   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for ricegap.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam ricegap
Name-to-Thing n2t ricegap
Prefix Commons prefixcommons RICEGAP
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ricegap:LOC_Os02g13300 is used to demonstrate the provides available for ricegap. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Rice Genome Annotation Project ricegap http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=LOC_Os02g13300
Bioregistry bioregistry https://bioregistry.io/ricegap:LOC_Os02g13300
Identifiers.org miriam https://identifiers.org/ricegap:LOC_Os02g13300
Name-to-Thing n2t https://n2t.net/ricegap:LOC_Os02g13300