Registry Reference Sequence Collection

The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.

Prefix
refseq
Alternative Prefixes
REFSEQ_PROT
Links
Homepage
Contact
Missing Contact
Pattern
^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$
Namespace in Pattern
False
Example Identifier
NP_012345   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for refseq.

Registry Name Metaprefix Metaidentifier
Gene Ontology Registry go RefSeq
Identifiers.org miriam refseq
Name-to-Thing n2t refseq
Prefix Commons prefixcommons RefSeq
UniProt Cross-ref database uniprot RefSeq
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE refseq:NP_012345 is used to demonstrate the provides available for refseq. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Reference Sequence Collection refseq https://www.ncbi.nlm.nih.gov/protein/NP_012345
Bioregistry bioregistry https://bioregistry.io/refseq:NP_012345
Identifiers.org miriam https://identifiers.org/refseq:NP_012345
Name-to-Thing n2t https://n2t.net/refseq:NP_012345