The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.

Prefix

pride

Keywords

ontology protein proteomics

Version

2025-02-17

Links

Homepage Repository OWL

Contact

Yasset Perez-Riverol   0000-0001-6579-6941   ypriverol

Pattern for Local Unique Identifiers

Local identifiers in Proteomics Identification Database Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000006   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Proteomics Identification Database Ontology should match this regular expression:
^pride:\d{7}$

Example CURIE

pride:0000006

Publications

• 2022 The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
• 2019 The PRIDE database and related tools and resources in 2019: improving support for quantification data
• 2015 2016 update of the PRIDE database and its related tools
• 2014 How to submit MS proteomics data to ProteomeXchange via the PRIDE database
• 2014 ProteomeXchange provides globally coordinated proteomics data submission and dissemination
• 2012 The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
• 2008 Using the Proteomics Identifications Database (PRIDE)
• 2007 PRIDE: new developments and new datasets
• 2006 PRIDE: a public repository of protein and peptide identifications for the proteomics community
• 2005 PRIDE: the proteomics identifications database

A summary of the relations in the Bioregistry schema can be found here.

In Collection

Resources mentioned in "Sharing biological data: why, when, and how"

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000006 is used to demonstrate the providers available for Proteomics Identification Database Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.