AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

Prefix

plasmodb

Alternative Prefixes

ApiDB_PlasmoDB

Keywords

genome genomics infectious disease medicine

Links

Homepage

Contact

Omar S. Harb   0000-0003-4446-6200   ramobrah

Pattern for Local Unique Identifiers

Local identifiers in PlasmoDB should match this regular expression:
^\w+$

Example Local Unique Identifier

PF11_0344   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PlasmoDB should match this regular expression:
^plasmodb:\w+$

Example CURIE

plasmodb:PF11_0344

Publications

2008 PlasmoDB: a functional genomic database for malaria parasites

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 6 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PF11_0344 is used to demonstrate the providers available for PlasmoDB. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.