Identifier Standards
Pattern for Local Unique Identifiers

Local identifiers in PharmGKB should match this regular expression:
^PA[1-9]\d*$

Example Local Unique Identifier
PA134955224   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB should match this regular expression:
^pharmgkb:PA[1-9]\d*$

Example CURIE
pharmgkb:PA134955224
Contacts
Contact
Missing Contact
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has Parts (bfo:0000051 )
pharmgkb.disease pharmgkb.drug pharmgkb.gene pharmgkb.pathways pharmgkb.variant
Metaregistry PharmGKB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
EDAM EDAM Ontology logo edam 2649
Pathguide Pathguide logo pathguide 117
Prefix Commons Prefix Commons logo prefixcommons pharmgkb
re3data Registry of Research Data Repositories logo re3data r3d100012325
Wikidata Wikidata Property logo wikidata P7001
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PA134955224 is used to demonstrate the providers available for PharmGKB. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name Metaprefix URI
PharmGKB pharmgkb https://www.clinpgx.org/accession/PA134955224
Bioregistry bioregistry https://bioregistry.io/pharmgkb:PA134955224
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pharmgkb:PA134955224