Registry Proteoform Atlas

Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.

Prefix: pfr
Alternative Prefixes: TDR
Links: Homepage

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Proteoform Atlas should match this regular expression:
^\d+$
Example Local Unique Identifier: 1001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Proteoform Atlas should match this regular expression:
^pfr:\d+$
Example CURIE: pfr:1001

Contacts

Contact: Missing Contact
Contributors: submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1001 is used to demonstrate the providers available for Proteoform Atlas. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Proteoform Atlas	`pfr`	http://repository.topdownproteomics.org/proteoforms/1001
Bioregistry	`bioregistry`	https://bioregistry.io/pfr:1001

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("TDR")
'pfr'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("pfr")
{'TDR'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("pfr")
'Proteoform Atlas'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pfr")
'http://repository.topdownproteomics.org/proteoforms'