Registry Physiologically-Based Pharmacokinetic Ontology

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An ontology for modeling and understanding of pharmacokinetics in biological systems.

Prefix: pbpko
Preferred Prefix: PBPKO
Keywords: obo ontology
License: CC-BY-3.0
Links: Homepage Repository OBO OWL OBO JSON

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: 10008 Resolve
Example CURIE: PBPKO:10008
Pattern for RDF URIs: http://purl.obolibrary.org/obo/PBPKO_$1
Example RDF URI: http://purl.obolibrary.org/obo/PBPKO_10008

Contacts

Contact: Saurav Kumar 0000-0003-0593-2598 Crispae

Metaregistry Physiologically-Based Pharmacokinetic Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`PBPKO`
BioPortal	`bioportal`	`PBPKO`
OBO Foundry	`obofoundry`	`pbpko`
OLS	`ols`	`pbpko`
OntoBee	`ontobee`	`PBPKO`

Providers

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A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 10008 is used to demonstrate the providers available for Physiologically-Based Pharmacokinetic Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Physiologically-Based Pharmacokinetic Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/PBPKO_10008
Bioregistry	`bioregistry`	https://bioregistry.io/pbpko:10008
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PBPKO_10008
EBI Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/pbpko/terms?iri=http://purl.obolibrary.org/obo/PBPKO_10008
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PBPKO/?p=classes&conceptid=http://purl.obolibrary.org/obo/PBPKO_10008

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("pbpko")
'Physiologically-Based Pharmacokinetic Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("pbpko")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pbpko")
'https://github.com/InSilicoVida-Research-Lab/pbpko'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("pbpko")
'https://github.com/InSilicoVida-Research-Lab/pbpko'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("pbpko")
'http://purl.obolibrary.org/obo/pbpko.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("pbpko")
'http://purl.obolibrary.org/obo/pbpko.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("pbpko")
'http://purl.obolibrary.org/obo/pbpko.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("pbpko")
'Saurav Kumar'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("pbpko")
'saurav.kumar@iispv.cat'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("pbpko")
'Crispae'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("pbpko")
'0000-0003-0593-2598'