PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.

Prefix
paxdb.protein
Links
Homepage
Contact
Missing Contact
Pattern
^\d+$
Namespace in Pattern
False
Example Identifier
977869   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.protein.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam paxdb.protein
Name-to-Thing n2t paxdb.protein
Prefix Commons prefixcommons PAXDB.PROTEIN
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.protein:977869 is used to demonstrate the provides available for paxdb.protein. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
PaxDb Protein paxdb.protein http://pax-db.org/#!protein/977869
Bioregistry bioregistry https://bioregistry.io/paxdb.protein:977869
Identifiers.org miriam https://identifiers.org/paxdb.protein:977869
Name-to-Thing n2t https://n2t.net/paxdb.protein:977869