PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.

Prefix
paxdb.organism
Links
Homepage
Contact
Missing Contact
Pattern
^\d+$
Namespace in Pattern
False
Example Identifier
9606   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.organism.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam paxdb.organism
Name-to-Thing n2t paxdb.organism
Prefix Commons prefixcommons PAXDB.ORGANISM
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.organism:9606 is used to demonstrate the provides available for paxdb.organism. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
PaxDb Organism paxdb.organism http://pax-db.org/#!species/9606
Bioregistry bioregistry https://bioregistry.io/paxdb.organism:9606
Identifiers.org miriam https://identifiers.org/paxdb.organism:9606
Name-to-Thing n2t https://n2t.net/paxdb.organism:9606