The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).

Prefix
omit
Preferred Prefix
OMIT
Alternative Prefixes
OMIT
Keywords
annotation biology cell computational biological predictions gene gene prediction life science micro rna molecular entity molecular interaction obo ontology protein regulation of gene expression
Version
dev
License
CC-BY-3.0
Links
Homepage Repository OBO OWL
Contact
Jingshan Huang   0000-0003-2408-2883   Huang-OMIT
Pattern for Local Unique Identifiers

Local identifiers in Ontology for MicroRNA Target should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000069   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology for MicroRNA Target should match this regular expression:
^OMIT:\d{7}$

Example CURIE
OMIT:0000069
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 )
MCO
Metaregistry Ontology for MicroRNA Target

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl OMIT
BioContext biocontext OMIT
BioPortal BioPortal Prefixes logo bioportal OMIT
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.mf91p5
Identifiers.org Identifiers.org logo miriam omit
N2T Name-to-Thing logo n2t omit
OBO Foundry OBO Foundry logo obofoundry omit
OLS Ontology Lookup Service logo ols omit
OntoBee OntoBee logo ontobee OMIT
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/OMIT_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000069 is used to demonstrate the providers available for Ontology for MicroRNA Target. A guide for curating additional providers can be found here.

Name Metaprefix URI
Ontology for MicroRNA Target omit http://purl.obolibrary.org/obo/OMIT_0000069
Ontology for MicroRNA Target (RDF) rdf http://purl.obolibrary.org/obo/OMIT_0000069
Bioregistry bioregistry https://bioregistry.io/omit:0000069
Identifiers.org miriam https://identifiers.org/omit:0000069
OBO Foundry obofoundry http://purl.obolibrary.org/obo/OMIT_0000069
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/omit/terms?iri=http://purl.obolibrary.org/obo/OMIT_0000069
Name-to-Thing n2t https://n2t.net/omit:0000069
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/OMIT/?p=classes&conceptid=http://purl.obolibrary.org/obo/OMIT_0000069