The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.
nucleotide
Local identifiers in Nucleotide should match this
regular expression:
^[a-zA-Z0-9_\.]+$
Compact URIs (CURIEs) constructed from Nucleotide should match
this regular expression:
^nucleotide:[a-zA-Z0-9_\.]+$
A summary of the relations in the Bioregistry schema can be found here.
bioregistry.schema:0000016
)
This resource shares one or more URI format strings with insdc .
Therefore, when generating an extended prefix map, nucleotide
,
its CURIE prefix synonyms, and its URI prefix synonyms are merged into the
record for
insdc
.
If you believe that these are two distinct semantic spaces and should not be merged,
please open a new issue on the Bioregistry issue tracker
for discussion.
The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
Integbio | integbio |
nbdc00600
|
|
Identifiers.org | miriam |
nucleotide
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
nucleotide:880798137
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Nucleotide | nucleotide |
https://www.ncbi.nlm.nih.gov/nuccore/880798137 |
Bioregistry | bioregistry |
https://bioregistry.io/nucleotide:880798137 |
Identifiers.org | miriam |
https://identifiers.org/nucleotide:880798137 |