The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.

Prefix
nucleotide
Links
Homepage
Contact
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Pattern for Local Unique Identifiers

Local identifiers in Nucleotide should match this regular expression:
^[a-zA-Z0-9_\.]+$

Example Local Unique Identifier
880798137   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide should match this regular expression:
^nucleotide:[a-zA-Z0-9_\.]+$

Example CURIE
nucleotide:880798137
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with insdc .

Therefore, when generating an extended prefix map, nucleotide, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for insdc . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Nucleotide

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Integbio Integbio logo integbio nbdc00600
Identifiers.org Identifiers.org logo miriam nucleotide
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE nucleotide:880798137 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Nucleotide nucleotide https://www.ncbi.nlm.nih.gov/nuccore/880798137
Bioregistry bioregistry https://bioregistry.io/nucleotide:880798137
Identifiers.org miriam https://identifiers.org/nucleotide:880798137