A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

Prefix
ncbi.assembly
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Assembly should match this regular expression:
^[a-zA-Z0-9_\.]+$

Example Local Unique Identifier
GCF_000005845.2   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Assembly should match this regular expression:
^ncbi\.assembly:[a-zA-Z0-9_\.]+$

Example CURIE
ncbi.assembly:GCF_000005845.2
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with ncbi.assembly:
insdc.gca insdc.gcf

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for ncbi.assembly. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Assembly

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext NCBIAssembly
Identifiers.org Identifiers.org logo miriam assembly
re3data Registry of Research Data Repositories logo re3data r3d100012688
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ncbi.assembly:GCF_000005845.2 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Assembly ncbi.assembly https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2
Bioregistry bioregistry https://bioregistry.io/ncbi.assembly:GCF_000005845.2
Identifiers.org miriam https://identifiers.org/assembly:GCF_000005845.2