A structured controlled vocabulary of the adult anatomy of the mouse (Mus)

Prefix

ma

Preferred Prefix

MA

Keywords

anatomy mouse obo ontology organ tissue

Version

2017-02-07

License

CC-BY-4.0

Links

Homepage Repository OBO OWL

Contact

Terry Hayamizu   0000-0002-0956-8634   tfhayamizu

Pattern for Local Unique Identifiers

Local identifiers in Mouse adult gross anatomy should match this regular expression:
^\d+$

Example Local Unique Identifier

0002502   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Mouse adult gross anatomy should match this regular expression:
^MA:\d+$

Example CURIE

MA:0002502

MIRIAM Namespace Embedded in LUI

The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Mouse adult gross anatomy, the banana looks like MA:. Therefore, you may see local unique identifiers for this resource that look like MA:0002502 (instead of the canonical form 0002502) and CURIEs for this resource that look like MA:MA:0002502 (instead of the canonical form MA:0002502). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Publications

2005 The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 2 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/MA_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0002502 is used to demonstrate the providers available for Mouse adult gross anatomy. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.