Registry Insertion sequence elements database

ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.

Prefix
isfinder
Links
Homepage
Contact
Missing Contact
Pattern
^IS\w+(\-\d)?$
Namespace in Pattern
False
Example Identifier
ISA1083-2   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for isfinder.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam isfinder
Name-to-Thing n2t isfinder
National Center for Biotechnology Information Registry ncbi ISFinder
Prefix Commons prefixcommons ISFINDER
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE isfinder:ISA1083-2 is used to demonstrate the provides available for isfinder. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Insertion sequence elements database isfinder https://www-is.biotoul.fr/scripts/ficheIS.php?name=ISA1083-2
Bioregistry bioregistry https://bioregistry.io/isfinder:ISA1083-2
Identifiers.org miriam https://identifiers.org/isfinder:ISA1083-2
Name-to-Thing n2t https://n2t.net/isfinder:ISA1083-2