Registry Database of homology-derived secondary structure of proteins

HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Prefix
hssp
Links
Homepage
Contact
Missing Contact
Pattern
^\w{4}$
Namespace in Pattern
False
Example Identifier
102l   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for hssp.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam hssp
Name-to-Thing n2t hssp
National Center for Biotechnology Information Registry ncbi HSSP
Prefix Commons prefixcommons HSSP
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hssp:102l is used to demonstrate the provides available for hssp. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Database of homology-derived secondary structure of proteins hssp ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2
Bioregistry bioregistry https://bioregistry.io/hssp:102l
Identifiers.org miriam https://identifiers.org/hssp:102l
Name-to-Thing n2t https://n2t.net/hssp:102l
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW HSSP at CMBI ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2