HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Prefix

hssp

Keywords

clustering protein sequence

Links

Homepage

Contact

Chris Sander   0000-0001-6059-6270

Pattern for Local Unique Identifiers

Local identifiers in Database of homology-derived secondary structure of proteins should match this regular expression:
^\w{4}$

Example Local Unique Identifier

102l   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of homology-derived secondary structure of proteins should match this regular expression:
^hssp:\w{4}$

Example CURIE

hssp:102l

Publications

• 1996 The HSSP database of protein structure-sequence alignments
• 1994 The HSSP database of protein structure-sequence alignments

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 102l is used to demonstrate the providers available for Database of homology-derived secondary structure of proteins. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.