Registry Human Metabolome Database

The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.

Prefix
hmdb
Alternative Prefixes
HMDB
Links
Homepage
Contact
Missing Contact
Pattern
^HMDB\d+$
Namespace in Pattern
False
Example Identifier
HMDB00001   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for hmdb.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam hmdb
Name-to-Thing n2t hmdb
Prefix Commons prefixcommons HMDB
Wikidata Property wikidata P2057
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hmdb:HMDB00001 is used to demonstrate the provides available for hmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Human Metabolome Database hmdb http://www.hmdb.ca/metabolites/HMDB00001
Bioregistry bioregistry https://bioregistry.io/hmdb:HMDB00001
Identifiers.org miriam https://identifiers.org/hmdb:HMDB00001
Name-to-Thing n2t https://n2t.net/hmdb:HMDB00001