Registry High-quality Automated and Manual Annotation of microbial Proteomes

HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.

Prefix
hamap
Links
Homepage
Contact
Missing Contact
Pattern
^MF_\d+$
Namespace in Pattern
False
Example Identifier
MF_01400   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for hamap.

Registry Name Metaprefix Metaidentifier
Gene Ontology Registry go HAMAP
Identifiers.org miriam hamap
Name-to-Thing n2t hamap
Prefix Commons prefixcommons HAMAP
UniProt Cross-ref database uniprot HAMAP
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hamap:MF_01400 is used to demonstrate the provides available for hamap. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
High-quality Automated and Manual Annotation of microbial Proteomes hamap https://hamap.expasy.org/unirule/MF_01400
Bioregistry bioregistry https://bioregistry.io/hamap:MF_01400
Identifiers.org miriam https://identifiers.org/hamap:MF_01400
Name-to-Thing n2t https://n2t.net/hamap:MF_01400