An ontology to represent genomics cohort attributes.

Prefix
gecko
Preferred Prefix
GECKO
Keywords
biological sample experimental measurement genomics life science obo ontology statistics survey
Version
2021-01-18
License
CC-BY-4.0
Links
Homepage Repository OWL
Contact
Rebecca Jackson   0000-0003-4871-5569   beckyjackson
Pattern for Local Unique Identifiers

Local identifiers in Genomics Cohorts Knowledge Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000044   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genomics Cohorts Knowledge Ontology should match this regular expression:
^GECKO:\d{7}$

Example CURIE
GECKO:0000044
Metaregistry Genomics Cohorts Knowledge Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl GECKO
BioPortal BioPortal Prefixes logo bioportal GECKO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3da56b
OBO Foundry OBO Foundry logo obofoundry gecko
OLS Ontology Lookup Service logo ols gecko
OntoBee OntoBee logo ontobee GECKO
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/GECKO_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000044 is used to demonstrate the providers available for Genomics Cohorts Knowledge Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Genomics Cohorts Knowledge Ontology gecko http://purl.obolibrary.org/obo/GECKO_0000044
Genomics Cohorts Knowledge Ontology (RDF) rdf http://purl.obolibrary.org/obo/GECKO_0000044
Bioregistry bioregistry https://bioregistry.io/gecko:0000044
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GECKO_0000044
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_0000044
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/GECKO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GECKO_0000044