The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.

Prefix
fsnp
Links
Homepage
Contact
Missing Contact
Pattern
^rs\d+$
Namespace in Pattern
False
Example Identifier
rs17852708   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for fsnp.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam fsnp
Name-to-Thing n2t fsnp
Prefix Commons prefixcommons FSNP
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE fsnp:rs17852708 is used to demonstrate the provides available for fsnp. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
F-SNP fsnp http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=rs17852708
Bioregistry bioregistry https://bioregistry.io/fsnp:rs17852708
Identifiers.org miriam https://identifiers.org/fsnp:rs17852708
Name-to-Thing n2t https://n2t.net/fsnp:rs17852708