FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
- Prefix
fplx- Alternative Prefixes
- famplex
- Keywords
- ontology
- License
- CC0-1.0
- Links
- Homepage
- Contact
- Benjamin M. Gyori 0000-0001-9439-5346 bgyori
- Pattern for Local Unique Identifiers
-
Local identifiers in FamPlex should match this regular expression:
^[a-zA-Z0-9][A-Za-z0-9_]+$ - Example Local Unique Identifier
- GPIb_IX_V Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from FamPlex should match this regular expression:
^fplx:[a-zA-Z0-9][A-Za-z0-9_]+$ - Example CURIE
- fplx:GPIb_IX_V
- Publications
- 2018 FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining
Metaregistry FamPlex
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
FPLX
|
|
| BioContext | biocontext |
FPLX
|
|
BioPortal
|
bioportal |
FPLX
|
|
Identifiers.org
|
miriam |
fplx
|
|
N2T
|
n2t |
fplx
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier GPIb_IX_V is used to demonstrate the providers
available for FamPlex. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| FamPlex | fplx |
https://sorgerlab.github.io/famplex/GPIb_IX_V |
| Bioregistry | bioregistry |
https://bioregistry.io/fplx:GPIb_IX_V |
| Identifiers.org | miriam |
https://identifiers.org/fplx:GPIb_IX_V |
| Name-to-Thing | n2t |
https://n2t.net/fplx:GPIb_IX_V |