The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.

Prefix

eo

Preferred Prefix

EO

Keywords

obo ontology plant

License

CC-BY-4.0

Links

Homepage Repository OBO OWL

Contact

Pankaj Jaiswal   0000-0002-1005-8383   jaiswalp

Pattern for Local Unique Identifiers

Local identifiers in Plant Environment Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0007404   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Environment Ontology should match this regular expression:
^EO:\d{7}$

Example CURIE

EO:0007404

MIRIAM Namespace Embedded in LUI

The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Plant Environment Ontology, the banana looks like EO:. Therefore, you may see local unique identifiers for this resource that look like EO:0007404 (instead of the canonical form 0007404) and CURIEs for this resource that look like EO:EO:0007404 (instead of the canonical form EO:0007404). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Publications

2012 Ontologies as integrative tools for plant science

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 )

FOODON

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 1 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/EO_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0007404 is used to demonstrate the providers available for Plant Environment Ontology. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.