enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.

Prefix

envipath

Keywords

environmental science

Links

Homepage

Contact

Jörg Wicker   0000-0003-0533-3368

Pattern for Local Unique Identifiers

Local identifiers in enviPath should match this regular expression:
^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$

Example Local Unique Identifier

32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from enviPath should match this regular expression:
^envipath:[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$

Example CURIE

envipath:32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea

Publications

• 2021 Holistic evaluation of biodegradation pathway prediction: assessing multi-step reactions and intermediate products
• 2017 Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data
• 2015 enviPath--The environmental contaminant biotransformation pathway resource
• Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea is used to demonstrate the providers available for enviPath. A guide for curating additional providers can be found here.