Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.
ensembl.bacteria
Local identifiers in Ensembl Bacteria should match this
regular expression:
^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$
Compact URIs (CURIEs) constructed from Ensembl Bacteria should match
this regular expression:
^ensembl\.bacteria:((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
ENSEMBL.BACTERIA
|
|
FAIRSharing | fairsharing |
FAIRsharing.zsgmvd
|
|
Integbio | integbio |
nbdc00433
|
|
Identifiers.org | miriam |
ensembl.bacteria
|
|
N2T | n2t |
ensembl.bacteria
|
|
Prefix Commons | prefixcommons |
ensembl.bacteria
|
|
re3data | re3data |
r3d100011195
|
|
UniProt | uniprot |
DB-0147
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
ensembl.bacteria:MU9_3181
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Ensembl Bacteria | ensembl.bacteria |
https://bacteria.ensembl.org/id/MU9_3181 |
Bioregistry | bioregistry |
https://bioregistry.io/ensembl.bacteria:MU9_3181 |
Identifiers.org | miriam |
https://identifiers.org/ensembl.bacteria:MU9_3181 |
Name-to-Thing | n2t |
https://n2t.net/ensembl.bacteria:MU9_3181 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/ensembl.bacteria:MU9_3181 |