EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.
- Prefix
ecocyc- Keywords
- biology
- Links
- Homepage
- Contact
- Peter Karp 0000-0002-5876-6418 pkarp111
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- AICARTRANSIMPCYCLO-CPLX Resolve
- Example CURIE
- ecocyc:AICARTRANSIMPCYCLO-CPLX
- Publications
- Contributors
-
- contributor Chris Mungall 0000-0002-6601-2165 cmungall
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection
- Global Biodata Coalition - Global Core Biodata Resources
Metaregistry EcoCyc
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.65dmtr
|
|
GO
|
go |
EcoCyc
|
|
Integbio
|
integbio |
nbdc00262
|
|
NCBI
|
ncbi |
ECOCYC
|
|
Pathguide
|
pathguide |
9
|
|
re3data
|
re3data |
r3d100011277
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier AICARTRANSIMPCYCLO-CPLX is used to demonstrate the providers
available for EcoCyc. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| EcoCyc | ecocyc |
https://ecocyc.org/gene?id=AICARTRANSIMPCYCLO-CPLX |
| Bioregistry | bioregistry |
https://bioregistry.io/ecocyc:AICARTRANSIMPCYCLO-CPLX |