Registry E. coli Metabolite Database

The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.

Prefix
ecmdb
Alternative Prefixes
ECMDB
Links
Homepage
Contact
Missing Contact
Pattern
^ECMDB\d+$
Namespace in Pattern
False
Example Identifier
ECMDB00005   Resolve
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ecmdb:ECMDB00005 is used to demonstrate the provides available for ecmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
E. coli Metabolite Database ecmdb http://ecmdb.ca/compounds/ECMDB00005
Bioregistry bioregistry https://bioregistry.io/ecmdb:ECMDB00005